Disease: Malignant tumor of colon
Source: BEFREE ×
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs2279744
MDM2
0.605 0.640 12 68808800 intron variant T/G snv 0.31 47
rs397507444
MTHFR
0.405 0.880 1 11794407 missense variant T/G snv 306
rs1342387
ADIPOR1
0.776 0.120 1 202945228 intron variant T/C snv 0.53 12
rs25487
XRCC1
0.441 0.800 19 43551574 missense variant T/C snv 0.68 0.71 205
rs3804100
TLR2
0.633 0.720 4 153704257 synonymous variant T/C snv 9.0E-02 6.7E-02 36
rs13181
KLC3 ; ERCC2
0.487 0.760 19 45351661 stop gained T/A;G snv 4.0E-06; 0.32 134
rs1130409
APEX1
0.555 0.720 14 20456995 missense variant T/A;C;G snv 4.0E-06; 4.0E-06; 0.42 72
rs878854066
TP53
0.439 0.800 17 7676153 missense variant GG/AC mnv 213
rs6983267
PCAT1 ; CCAT2 ; CASC8 ; POU5F1B
0.578 0.440 8 127401060 non coding transcript exon variant G/T snv 0.37 55
rs1042522
TP53
0.426 0.800 17 7676154 missense variant G/C;T snv 0.67 242
rs35187787
CDH1
0.827 0.120 16 68822063 missense variant G/A;T snv 3.3E-03; 2.4E-05 5
rs7758229
SLC22A3
0.732 0.120 6 160419220 intron variant G/A;T snv 8
rs2854746
IGFBP3
0.752 0.200 7 45921046 missense variant G/A;C;T snv 0.38 13
rs1799782
XRCC1
0.474 0.800 19 43553422 missense variant G/A snv 9.5E-02 7.0E-02 151
rs1800566
NQO1
0.576 0.680 16 69711242 missense variant G/A snv 0.25 0.21 59
rs1800734
EPM2AIP1 ; MLH1
0.653 0.400 3 36993455 5 prime UTR variant G/A snv 0.22 30
rs1801133
MTHFR
0.472 0.880 1 11796321 missense variant G/A snv 0.31 0.27 169
rs2297518
NOS2
0.658 0.480 17 27769571 missense variant G/A snv 0.18 0.17 29
rs12733285
ADIPOR1
0.776 0.120 1 202952912 intron variant C/T snv 0.26 12
rs12917
MGMT ; LOC105378560
0.605 0.480 10 129708019 missense variant C/T snv 0.14 0.14 45
rs3748067
IL17A
0.672 0.320 6 52190541 3 prime UTR variant C/T snv 6.2E-02 21
rs25489
XRCC1
0.550 0.720 19 43552260 missense variant C/G;T snv 8.5E-06; 7.1E-02 78
rs7903146
TCF7L2
0.554 0.680 10 112998590 intron variant C/G;T snv 79
rs1052133
OGG1 ; CAMK1
0.476 0.800 3 9757089 missense variant C/G snv 0.27 0.22 147
rs1179251
IL22 ; LOC105369818
0.763 0.320 12 68251271 intron variant C/G snv 0.18 14